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If a freshly killed deer smells like ammonia, my first question would be did you puncture the urinary bladder during dressing. If so, you can start with trimming the lining out of the abdomen and see if that cleans the odor up - if not, you may have lost the carcass due to the contamination with urine. If you didn't spill urine from the urinary bladder in the carcass, you probably caught a deer with uremia, or urea (one of the main components of urine) in the blood at high concentrations. This is often caused by either a blocked urethra (such as stones in the urethra, which is the tube that connects the bladder to the outside world) or by nephritis, a kidney infection. If the entire carcass smells like urine, I will strongly suggest not eating it - in meat inspection, all uremic carcasses are automatically condemned.

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Q: What disease would cause fresh deer meat to produce ammonia?
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