While this answer applies specifically to Greece, the reasons here can be easily expanded to places like Indonesia which also developed as city-states.
1) Minimal Land Travel: The Greek Mainland (Thrace, Epirus, Boetia, Attica, and the Peloponnesus) is among the most mountainous and hilly land in all of Europe, making land travel between the city-state minimal. It also directed their efforts away from expanding their influence primarily over land and explains why non-coastal regions of Greece took the longest to develop.
2) Marine Travel and Naval Strength: Most of the city-states were relatively close to the water, especially those found on Crete, Cyprus, the Dodecanese Islands, or Cycladic Islands. Greek city-states favored marine travel which was more reliable and cost-effective than land travel. As a result, many city-states had strong navies as opposed to having strong armies. (Sparta is the one major exception to that rule.)
3) Chronic Disunity: Because of the prevalence of strong navies, the difficulty of land travel, and the presence of many invasion choke-points (the most famous being Thermopylae), the Greek city-states were never completely unified until Alexander the great conquered them all. (Sparta did defeat Athens in the Peloponnesian War, but only held onto that victory for a very short time. In addition, Sparta never expanded its power into Boetia or over the Cycladic Islands - which would have been the next logical places to expand.)
4) Pastoralism and Fishing: The mountainous terrain made growing crops very difficult. The two crops that the Greeks were able to cultivate were olives and wheat, but wheat was much more difficult to maintain than the olives. This forced Greeks to resort to pastoralism (primarily animal-based agriculture) and they raised goats, sheep, and pigs. As a result, there was a lot of dairy and meat in the Greek diet relative to contemporaneous civilizations (although significantly less than today). In addition, because of the access to the sea, Greek cuisine included vast amounts of shellfish, mollusks, and proper fishes.
The mountains separated the city states, the bays provided fertile land for farming, and the sea provided fishing and trading of sea food.
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Greece was built in between many rocky mountains and hills. This separated it and developed induvuidual city-states.
The geography of Greece influenced where people settled and what they did. Greece's geographic features influenced where people lived because of the high and many mountains made it hard to travel.
The oldest mountains in France are the Massif Mountains. They are situated in the heart of the country. The Massif Mountains take up to 15 per cent of the total surface area of France.